Use our digital tool set to perform a range of essential tasks in your cell sorting and genomics workflows. Simply register and log in to use the tools. The tools include an intuitive tool for designing primers, a visualizer for DE droplets detected and sorted on Xdrop Sort, and a calculator for cell encapsulation levels. Simply register on the Samplix website to access them.
The Samplix Droplet Viewer allows you to browse and select the CSV files exported from the Xdrop Sort instrument. It visualizes the detection or sorting zones on interactive, auto-generated plots to provide an overview of your entire run. These plots are easy to download too. The tool is freely available for registered users.
Use the Cell Distribution Calculator to calculate the Poisson distribution of your cells in DE droplets. This helps to predict the probability of a given number of events happening in a fixed interval of time, e.g., the probability of a certain number of cells being contained within droplets. This tool is freely available to registered users.
Use these calculators to determine input amounts and predict enrichment before your Xdrop experiments, and calculate the target enrichment after a run. They are freely available to registered users.
Use the Primer Design Tool to design the primers for the detection and validation sequences for your Xdrop sample enrichment workflow. This tool delivers the required number of droplet PCR primers (for the detection sequence) and qPCR primer pairs (for the validation sequence). It is freely available to registered users.
These tools are designed to facilitate the handling of Oxford Nanopore Technologies and Illumina data. They perform tasks like basecalling, reference downloads, and generating reports. They are provided free to Samplix customers but you must have a Github account to access them.
